DNA Damage Atlas

GSM4886898-v-Abl_cycling_Rep4

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR12996681


Source Project ID:   

GSE151906

Cell Type:   

v-Abl pro-B cell


Organism:   

Mus musculus


Strain:   

129sv


Treatment:   

RAG2 retrovirus infected, 3 uM STI 4 days


Genotype:   

Emu-Bcl2, RAG2 deficient


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

LAM-HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr5136982605136982831136982825176253-
chr6691109016911111569110903123370+
chr669814628698148356981463287265.3+
chr669184825691850316918482674198.3+
chr669700767697009746970076971602.3+
chr790441814904420329044202065864.7-
chr713059157213059178313059157365854.6+
chr514476729614476749714476749664522.2-
chr812605588312605608612605608563886.5-
chr410261995010262015410262015063573.4-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr6691109036911111069110903145658+
chr5136982618136982826136982825120718-
chr6697007676970097369700769108319+
chr6698146286981483569814632105930+
chr6700740217007422870074021102569+
chr670117058701172677011706284365.6+
chr670607832706080367060803582237.5-
chr669184826691850316918482675969.5+
chr669016559690167646901656074110.9+
chr669042973690431796904297366355.6+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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