DNA Damage Atlas

GSM4886900-BM_PreB_Rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR12996683


Source Project ID:   

GSE151906

Cell Type:   

BM Pre B cell


Organism:   

Mus musculus


Strain:   

129sv


Treatment:   

STI-571


Genotype:   

WT


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

LAM-HTGTS


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr6701718057017201870171808113416+
chr6699004216990063269900425104803+
chr6705186407051885270518848103871-
chr6682566596825687368256868102900-
chr669726569697267806972657395409.1+
chr669575972695761856957598078082.5+
chr669700764697009906970076977017+
chr670406463704066887040646676946.4+
chr667556008675562196755621376327.3-
chr668121615681218306812182675627.5-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr6676102996761051167610509110080-
chr6691109016911111469110909109904+
chr6701718057017201870171808109813+
chr6702168557021706670216859106534+
chr6706078287060803970608033106060-
chr6699004216990063269900425100550+
chr669726569697267786972657399740.3+
chr670518642705188527051884899072.7-
chr668256661682568726825686895645.5-
chr668037110680373216803732190487.1-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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