DNA Damage Atlas

GSM4886901-BM_PreB_Rep3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR12996684


Source Project ID:   

GSE151906

Cell Type:   

BM Pre B cell


Organism:   

Mus musculus


Strain:   

129sv


Treatment:   

STI-571


Genotype:   

WT


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

LAM-HTGTS


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr6691109016911111769110909110684+
chr6706078287060803970608033109084-
chr6697265696972678069726573105917+
chr670518632705188527051884895509-
chr668037110680373216803732193424.9-
chr668256650682568726825686888126.9-
chr670260406702606177026040687794.8+
chr667861451678616626786166273543.6-
chr668271051682712706827126669839.9-
chr668121613681218306812182668430.7-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr6676102996761051167610509110080-
chr6691109016911111469110909109904+
chr6701718057017201870171808109813+
chr6702168557021706670216859106534+
chr6706078287060803970608033106060-
chr6699004216990063269900425100550+
chr669726569697267786972657399740.3+
chr670518642705188527051884899072.7-
chr668256661682568726825686895645.5-
chr668037110680373216803732190487.1-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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