DNA Damage Atlas

GSM4886903-Untreated_Wapl-degron_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR12996686


Source Project ID:   

GSE151906

Cell Type:   

v-Abl pro-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

RAG1/2 retrovirus infected, 3 uM STI 4 days


Genotype:   

Wapl-degron, OsTIR1, Single Igh, Emu-Bcl2, RAG1 deficient


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

LAM-HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr670751269707520067075178086783.5-
chr669110901691111486911090976631.8+
chr670216605702170777021685975458.7+
chr668037086680373216803732161125.7-
chr669575774695762466957598060018.9+
chr670073812700742797007402559759.4+
chr669900219699006466990042559060.2+
chr670340871703411567034087758482+
chr670518591705190507051884858323.1-
chr670607785706082487060803558061.8-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr6707514527075199270751780104652-
chr669110901691111286911090993177.9+
chr670216654702170777021685985749.1+
chr670406465704066897040646684730.3+
chr670340872703410997034087772745.1+
chr668037099680373216803732171675.1-
chr670314879703151277031489871008.9+
chr669575774695761996957598066903.4+
chr669726372697268076972657366106.6+
chr670518625705190507051884864173.3-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab