DNA Damage Atlas

GSM4886904-Untreated_Wapl-degron_rep3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR12996687


Source Project ID:   

GSE151906

Cell Type:   

v-Abl pro-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

RAG1/2 retrovirus infected, 3 uM STI 4 days


Genotype:   

Wapl-degron, OsTIR1, Single Igh, Emu-Bcl2, RAG1 deficient


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

LAM-HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr6691109016911112869110909101305+
chr668037085680373226803732172984.3-
chr669575774695761996957598068587.5+
chr670340872703410997034087767616+
chr670216602702171157021685965769.4+
chr669726371697268076972657365355.7+
chr668256651682570766825686861411.6-
chr670607778706082387060803559953.5-
chr670751139707520597075178058522.1-
chr670073813700742797007402758504+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr6707514527075199270751780104652-
chr669110901691111286911090993177.9+
chr670216654702170777021685985749.1+
chr670406465704066897040646684730.3+
chr670340872703410997034087772745.1+
chr668037099680373216803732171675.1-
chr670314879703151277031489871008.9+
chr669575774695761996957598066903.4+
chr669726372697268076972657366106.6+
chr670518625705190507051884864173.3-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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