DNA Damage Atlas


GSM4886906-IAADox_Wapl-degron_rep2




Basic Information

Manual

Sample ID:   

SRR12996689


Source Project ID:   

GSE151906

Cell Type:   

v-Abl pro-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

RAG1/2 retrovirus infected + STI-571 + IAA + Doxycycline


Treatment Time:   

STI-571: 4days + IAA, Dox: 3days


Treatment Dose:   

3uM STI-571 + 150uM IAA + 2mg/mL Dox


Genotype:   

Wapl-degron, OsTIR1, Single Igh, Emu-Bcl2, RAG1 deficient


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

LAM-HTGTS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr6676102816761071567610509164100-
chr6682566566825687268256868102531-
chr669700684697009836970076995119.2+
chr669184823691850376918483193737.9+
chr669814430698148456981463283941.2+
chr668302945683033636830315777219.2-
chr667760198677604166776041476115.5-
chr670698860706990707069906672924.7-
chr668425854684262736842606962575.8-
chr668270948682714736827126660968.3-
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr6676102816761071267610509167554-
chr6682566616825687268256868110582-
chr669700684697009836970076988313.8+
chr667725445677256646772566285292.6-
chr669814430698148456981463283280.4+
chr669184823691850326918483179148.5+
chr667760203677604166776041478441.5-
chr670698860706990707069906668646.9-
chr668302948683033596830315766394.9-
chr668425860684262736842606963457.2-
Download the Full Merged Peak List



Motif Analysis

Manual





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