DNA Damage Atlas

GSM4907506-DKO2_HTGTS

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR13057790


Source Project ID:   

GSE161461

Cell Type:   

Spleen B cell


Organism:   

Mus musculus


Strain:   

C57BL/6J


Genotype:   

CD19 DKO


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1211342267211342794011342536892699.3-
chr1211328842311329580611329371961383.4-
chr1211336249411336509811336298210221.2-
chr121133092101133111801133099605201.83-
chr121133382501133384661133384521795.13-
chr41328851991328854021328854021637.22-
chr121132619621132629801132622071278.71-
chr111629500316295322162951221128.69+
chr19352763223527664135276573868.22-
chr12113275662113275916113275872763.282-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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