DNA Damage Atlas


GSM4942426-Naked_DNA_UV_Replicate_1_resequencing




Basic Information

Manual

Sample ID:   

SRR13132461


Source Project ID:   

GSE162125

Cell Type:   

NHF1


Organism:   

Homo sapiens


Treatment:   

UV


Treatment Dose:   

80 J/m2


Harvested Time:   

repair time: None


Layout:   

SINGLE


Instrument model:   

Ion_Torrent_Proton


Technique:   

CPD-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA28350289172861414.4507+
rDNA13450148121400912.4563+
rDNA1640417130168277.70093+
rDNA3181032393319527.60573+
rDNA4201842414420667.54603+
rDNA3133231627313507.18873+
rDNA3789539009385675.71098+
rDNA2341123934236065.52932+
chrUn_gl0002209596997316963765.22405-
chrUn_gl0002242009257623155.10023-
Download the Full Peak List



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab