DNA Damage Atlas


GSM4952240-WT_A_Cas9_Rep1




Basic Information

Manual

Sample ID:   

SRR13177110


Source Project ID:   

GSE162453

Cell Type:   

v-Abl pro-B cell


Organism:   

Mus musculus


Treatment:   

STI-571 + nucleofection Cas9:c-Myc gRNA


Treatment Time:   

STI-571: 96hrs


Treatment Dose:   

STI-571: 3µM


Genotype:   

Emu-Bcl2


Cell Phase:   

G1


Targeted break:   

c-Myc


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr15619871306198846561987304729964+
chr67072248770723127707225643004.91+
chr67072333670724108707238852362.26-
chr6325905253259072632590525329.926+
chr11855143038551450585514303328.293+
chr15472306084723081047230808328.293-
chr4142878627142878829142878627328.293+
chr6700738057007401970074005309.884-
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr15619871306198822761987304895274+
chr67072256270723127707225642038.06+
chr67072333670723890707238851790.88-
Download the Full Merged Peak List




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