DNA Damage Atlas


GSM4952264-Lig4_A1_cycling_Cas9_Rep1




Basic Information

Manual

Sample ID:   

SRR13177134


Source Project ID:   

GSE162453

Cell Type:   

v-Abl pro-B cell


Organism:   

Mus musculus


Treatment:   

nucleofection Cas9:c-Myc gRNA


Genotype:   

Emu-Bcl2, Lig4-/-


Cell Phase:   

cycling


Targeted break:   

c-Myc


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr15619839276199177561987309123200+
chr185232616552326367523263651481.89-
chr16069606560696268606960651474.59+
chr45995590759956110599561071474.59-
chr96917375691757869173751474.59+
chr21094350961094353001094350961467.36+
chr11866317586633778663175987.926+
chr13109124081091261010912608987.926-
chr15783268917832709378326891987.926+
chr3122770537122770739122770537987.926+
Download the Full Peak List



Motif Analysis

Manual





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