DNA Damage Atlas


GSM4952272-Lig4Ku70_A1_1_Cas9_Rep3




Basic Information

Manual

Sample ID:   

SRR13177142


Source Project ID:   

GSE162453

Cell Type:   

v-Abl pro-B cell


Organism:   

Mus musculus


Treatment:   

STI-571 + nucleofection Cas9:c-Myc gRNA


Treatment Time:   

STI-571: 96hrs


Treatment Dose:   

STI-571: 3µM


Genotype:   

Emu-Bcl2, Lig4-/- Ku70-/-


Cell Phase:   

G1


Targeted break:   

c-Myc


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr15619871306198820861987325795923+
chr67072224370724239707229621568.43+
chr67007381270074301700740121524.29-
chr91198124491198126511198124501476+
chr131933627419336783193365311464.4-
chr66791375267914298679139521365.16-
chr67011674570117352701170361227.97-
chr66968110469681658696813041210.9-
chr67024018470240437702404371178.46-
chr6698143616981486369814561890.891-
Download the Full Peak List



Motif Analysis

Manual





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