DNA Damage Atlas


GSM4952278-WT_A_b_Cas9_Rep3




Basic Information

Manual

Sample ID:   

SRR13177148


Source Project ID:   

GSE162453

Cell Type:   

v-Abl pro-B cell


Organism:   

Mus musculus


Treatment:   

STI-571 + nucleofection Cas9:c-Myc gRNA


Treatment Time:   

STI-571: 96hrs


Treatment Dose:   

STI-571: 3µM


Genotype:   

Emu-Bcl2


Cell Phase:   

G1


Targeted break:   

c-Myc


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr15619871306198850461987304719828+
chr67072256270722915707229151664.55-
chr6707233447072388770723885954.801-
chr5683155456831574768315545342.216+
chr3123064849123065052123065049340.53-
chr15728197437281994772819743338.861+
Download the Full Peak List



Motif Analysis

Manual





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