DNA Damage Atlas


GSM4952288-Lig4Ku70_C1_Cas9_Rep1




Basic Information

Manual

Sample ID:   

SRR13177158


Source Project ID:   

GSE162453

Cell Type:   

v-Abl pro-B cell


Organism:   

Mus musculus


Treatment:   

STI-571 + nucleofection Cas9:c-Myc gRNA


Treatment Time:   

STI-571: 96hrs


Treatment Dose:   

STI-571: 3µM


Genotype:   

Emu-Bcl2, Lig4-/- Ku70-/-


Cell Phase:   

G1


Targeted break:   

c-Myc


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr15619867666198852961987319523724+
chr67011675770117420701171012422.68+
chr67007370170074830700740301841.15+
chr6687356616873659368736290861.715-
chr6707221577072410270722535837.973-
chr6696810786968166469681399725.563-
chr6682565086825713768256758638.409-
chr6676101886761074667610537634.976+
chr6681215656812291268121824596.227-
chr13193362951933688019336559484.536-
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr15619867666198820861987319642016+
chr67011678970117420701171012345.6+
chr67007374070074746700740301803.86+
chr66873603568736593687362901502.29-
chr66812158768122115681218241207.47-
chr67072215770723885707225351123.87-
chr6676102366761074667610537922.574+
chr6681641076816478068164419861.032-
chr6686804456868111368680807772.041-
chr13193363291933657119336559673.038-
Download the Full Merged Peak List



Motif Analysis

Manual





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