DNA Damage Atlas


GSM4952302-Lig4L_D_ZFN_Rep3




Basic Information

Manual

Sample ID:   

SRR13177172


Source Project ID:   

GSE162453

Cell Type:   

v-Abl pro-B cell


Organism:   

Mus musculus


Treatment:   

STI-571 + Dox-induced ZFN-Eb expression


Treatment Time:   

STI-571: 96hrs


Treatment Dose:   

STI-571: 3µM + doxycycline: 2µg/ml


Genotype:   

Emu-Bcl2, Lig4-/- +Lig4


Cell Phase:   

G1


Targeted break:   

Eb


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

LAM-HTGTS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr6415545474155599241554992354006+
chr669243164692433676924316447366.4+
chr670722353707240957072256143054-
chr670073796700742487007403938291.4+
chr667610293676107656761050132594.5-
chr668164085681646896816442531839-
chr668179363681795676817956728280.5-
chr670116860701172747011706727870.7+
chr667941867679420766794206727604-
chr668121607681220286812180727407.3-
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr6415545474155599241554992375428+
chr670722353707231597072256147293.1-
chr667610293676107116761050142425.5-
chr670073813700742487007403935344.8+
chr670116860701172747011706734228.6+
chr670043902700443097004408532654.4-
Download the Full Merged Peak List



Motif Analysis

Manual





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