Sample Detail

Basic Information

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Sample ID:

SRR13177179

Source Project ID:

GSE162453

Cell Type:

v-Abl pro-B cell

Organism:

Mus musculus

Treatment:

STI-571 + Dox-induced ZFN-Eb expression

Treatment Time:

STI-571: 96hrs

Treatment Dose:

STI-571: 3µM + doxycycline: 2µg/ml

Genotype:

Emu-Bcl2, Lig4^-/- Ku70^-/-

Cell Phase:

Targeted break:

Layout:

PAIRED

Instrument model:

NextSeq 500

Technique:

LAM-HTGTS

Fastqc:

Genome Browser

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link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Distribution

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Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

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Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr6	41554173	41557111	41555004	278800	+
chr6	70073778	70074357	70074028	20100.6	+
chr6	67610162	67610788	67610498	17488.5	-
chr6	70116771	70117348	70117048	12649.1	-
chr7	130591572	130591780	130591573	12328.6	+
chr4	102619947	102620152	102620150	11065.7	-
chr5	136982619	136982826	136982825	9529.38	-
chr6	68121544	68122200	68121813	9472	-
chr6	69110582	69111148	69110887	8015.79	-
chr6	70722085	70724220	70722561	6236.5	-

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr6	41554650	41555618	41555004	824954	+
chr6	67610195	67610788	67610498	23489.6	-
chr6	70073778	70074310	70074028	20774.8	+
chr5	136982619	136982825	136982825	18058.8	-
chr6	70116820	70117348	70117048	15101.5	-
chr4	102619950	102620152	102620150	14178.8	-
chr6	68121548	68122200	68121813	13814.7	-
chr7	130591573	130591780	130591573	12295.6	+
chr6	70722308	70724113	70722561	9989.22	-
chr6	69110594	69111148	69110887	7089.24	-

Download the Full Merged Peak List

Visualization

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Profile

Heatmap

Download the matrix file

Motif Analysis

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Download