DNA Damage Atlas


GSM4952313-Lig4Ku70K_D1_ZFN_Rep2




Basic Information

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Sample ID:   

SRR13177183


Source Project ID:   

GSE162453

Cell Type:   

v-Abl pro-B cell


Organism:   

Mus musculus


Treatment:   

STI-571 + Dox-induced ZFN-Eb expression


Treatment Time:   

STI-571: 96hrs


Treatment Dose:   

STI-571: 3µM + doxycycline: 2µg/ml


Genotype:   

Emu-Bcl2, Lig4-/- Ku70-/- +Ku70


Cell Phase:   

G1


Targeted break:   

Eb


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

LAM-HTGTS


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr6415544074155614341555004223023+
chr7130591572130591783130591573183492+
chr5136982619136982826136982825171006-
chr410261995010262015210262015087619.4-
chr812605588312605608512605608587619.4-
chr1012176307512176328912176327841353.1-
chr313555427613555448613555427736873.2+
chr413730001913730023613730002335683.7+
chr790441820904420249044202032535.1-
chr240480429404806394048042931605.6+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr6415549824155614341555004314912+
chr7130591573130591780130591573213964+
chr5136982619136982826136982825169981-
chr410261995010262015210262015083964.6-
chr313555427613555448113555427754807.6+
chr1445812660458128664581286227159-
chr489217114892173258921711424658.6+
chr1474845990748461947484619021287-
chr1012176307512176327912176327818570.2-
chr413730002313730022513730002316298.5+
Download the Full Merged Peak List



Motif Analysis

Manual





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