DNA Damage Atlas


GSM4952316-Lig4Ku70_D2_ZFN_Rep2




Basic Information

Manual

Sample ID:   

SRR13177186


Source Project ID:   

GSE162453

Cell Type:   

v-Abl pro-B cell


Organism:   

Mus musculus


Treatment:   

STI-571 + Dox-induced ZFN-Eb expression


Treatment Time:   

STI-571: 96hrs


Treatment Dose:   

STI-571: 3µM + doxycycline: 2µg/ml


Genotype:   

Emu-Bcl2, Lig4-/- Ku70-/-


Cell Phase:   

G1


Targeted break:   

Eb


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

LAM-HTGTS


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr6415549784155620941555004635612+
chr667610221676108326761049428449.3-
chr670116804701173487011705117728.9-
chr670073754700747767007401712728.8+
chr668164197681646746816440112225.5-
chr670722276707242587072256111938.8-
chr668121270681220926812181310095.8-
chr51369826191369828271369828259165.72-
chr71305915731305917811305915737548.24+
chr66873602568736550687363076408.31+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr64155497841555525415550041205195+
chr667610266676107486761049438592.6-
chr513698261913698282613698282536886.8-
chr670073783700743207007401728988.2+
chr713059157313059177513059157328692.5+
chr668121396681220736812181323516-
chr670116838701173107011705122775.3-
chr410261995010262015210262015021594.3-
chr668164197681646746816440119439.2-
chr670722349707231307072256119258.4-
Download the Full Merged Peak List



Motif Analysis

Manual





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