DNA Damage Atlas


GSM4952319-Lig4Ku70K_D2_ZFN_Rep2




Basic Information

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Sample ID:   

SRR13177189


Source Project ID:   

GSE162453

Cell Type:   

v-Abl pro-B cell


Organism:   

Mus musculus


Treatment:   

STI-571 + Dox-induced ZFN-Eb expression


Treatment Time:   

STI-571: 96hrs


Treatment Dose:   

STI-571: 3µM + doxycycline: 2µg/ml


Genotype:   

Emu-Bcl2, Lig4-/- Ku70-/- +Ku70


Cell Phase:   

G1


Targeted break:   

Eb


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

LAM-HTGTS


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr7130591572130591781130591573299981+
chr5136982620136982826136982825289132-
chr6415549174155536141554987225931+
chr3135554275135554477135554277108632+
chr4102619950102620152102620150108632-
chr7904418209044202790442020106008-
chr1122973014229732172297321492654.1-
chr1474845990748461977484619190863.7-
chr1733796503379862337985588720.6-
chr1351080124510803285108032876833.2-
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr7130591573130591775130591573329496+
chr5136982621136982825136982825211125-
chr6415549174155529341554987176239+
chr410261995010262015110262015097448.9-
chr790441820904420249044202073907.8-
chr1474845990748461947484619160676.5-
chr1351080124510803285108032860529.2-
chr1460697552606977556069774939703.5-
chr489217114892173208921711439586.4+
chr1122973014229732162297321438633.2-
Download the Full Merged Peak List



Motif Analysis

Manual





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