DNA Damage Atlas


GSM4952321-WT_A_RAG_Rep1




Basic Information

Manual

Sample ID:   

SRR13177191


Source Project ID:   

GSE162453

Cell Type:   

v-Abl pro-B cell


Organism:   

Mus musculus


Treatment:   

STI-571


Treatment Time:   

96hrs


Treatment Dose:   

3μM


Genotype:   

Emu-Bcl2


Cell Phase:   

G1


Targeted break:   

Jk1-CE


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr6694168926941713169416898109218+
chr6698144266981485569814634104174+
chr669267878692681076926788995107.2+
chr667610279676107096761050588896.1-
chr669184825691850496918483185865.5+
chr670607818706080397060803378712-
chr670573009705734337057322773333.5-
chr669544356695445856954436466698.5+
chr668121609681218306812182465456.2-
chr669016557690167946901655964191.4+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr6705730097057323370573227219013-
chr6698146286981484969814634149902+
chr6676102826761070967610505109862-
chr6701170607011728170117064105568+
chr6703148947031511470314898103816+
chr668736296687365146873630389818+
chr669631647696318696963165387247.6+
chr669607274696074916960728085773.4+
chr669416892694171156941689884987.1+
chr667913830679140556791404982741.2-
Download the Full Merged Peak List



Motif Analysis

Manual





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