DNA Damage Atlas

GSM4952330-Lig4L_A1_RAG_Rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR13177200


Source Project ID:   

GSE162453

Cell Type:   

v-Abl pro-B cell


Organism:   

Mus musculus


Treatment:   

STI-571


Treatment Time:   

96hrs


Treatment Dose:   

3μM


Genotype:   

Emu-Bcl2, Lig4-/- +Lig4


Cell Phase:   

G1


Targeted break:   

Jk1-CE


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr669814419698148506981463498106.7+
chr669700555697009896970077282297.6+
chr669607274696074976960727882238+
chr668736096687365216873630369531.1+
chr670116835701172937011706467843.5+
chr670073811700742537007402767400.4+
chr668121616681218306812182466611.3-
chr670314676703151167031489865704.7+
chr669267887692681096926788965293.1+
chr667610288676107156761050556264.6-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr6698144196981484569814634102658+
chr669700555697009896970077278567.8+
chr669607274696074976960727874730.8+
chr668121616681218306812182469713.6-
chr670116850701172857011706469117+
chr670073811700742467007402764640.8+
chr668736096687365216873630363497.6+
chr667610288676107156761050563251.3-
chr670314687703151167031489862392.1+
chr669267887692681086926788961697.4+
Download the Full Merged Peak List


Visualization

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Motif Analysis

Manual





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