DNA Damage Atlas


GSM4952336-Lig4Ku70_A1_1_RAG_Rep1




Basic Information

Manual

Sample ID:   

SRR13177206


Source Project ID:   

GSE162453

Cell Type:   

v-Abl pro-B cell


Organism:   

Mus musculus


Treatment:   

STI-571


Treatment Time:   

96hrs


Treatment Dose:   

3μM


Genotype:   

Emu-Bcl2, Lig4-/- Ku70-/-


Cell Phase:   

G1


Targeted break:   

Jk1-CE


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr670073773700742647007401380708.4-
chr670721494707256547072252464610.6-
chr670240180702406667024041760976.8-
chr670116802701173147011706760572.5+
chr667913614679142876791404941985.7-
chr668736057687366276873630641109+
chr669764273697647556976454940750.3+
chr667610234676107666761049839511.3-
chr669700405697010526970074337814.4-
chr669681109696816886968141136303.9+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr670721494707242217072252471502.1-
chr670073774700742647007401366089.3-
chr667913717679142876791404962715.2-
chr670116802701173147011706759107.6+
chr667610234676107386761049853573.8-
chr668736057687365856873630650242.7+
chr669681140696816846968141147076.8+
chr669814362698148996981463746602.9+
chr669700493697010156970074341728.4-
chr670314652703151317031488039376.1-
Download the Full Merged Peak List



Motif Analysis

Manual





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