DNA Damage Atlas

GSM4952336-Lig4Ku70_A1_1_RAG_Rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR13177206


Source Project ID:   

GSE162453

Cell Type:   

v-Abl pro-B cell


Organism:   

Mus musculus


Treatment:   

STI-571


Treatment Time:   

96hrs


Treatment Dose:   

3μM


Genotype:   

Emu-Bcl2, Lig4-/- Ku70-/-


Cell Phase:   

G1


Targeted break:   

Jk1-CE


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr670073773700742647007401380708.4-
chr670721494707256547072252464610.6-
chr670240180702406667024041760976.8-
chr670116802701173147011706760572.5+
chr667913614679142876791404941985.7-
chr668736057687366276873630641109+
chr669764273697647556976454940750.3+
chr667610234676107666761049839511.3-
chr669700405697010526970074337814.4-
chr669681109696816886968141136303.9+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr670721494707242217072252471502.1-
chr670073774700742647007401366089.3-
chr667913717679142876791404962715.2-
chr670116802701173147011706759107.6+
chr667610234676107386761049853573.8-
chr668736057687365856873630650242.7+
chr669681140696816846968141147076.8+
chr669814362698148996981463746602.9+
chr669700493697010156970074341728.4-
chr670314652703151317031488039376.1-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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