DNA Damage Atlas

GSM4952337-Lig4Ku70_A1_1_RAG_Rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR13177207


Source Project ID:   

GSE162453

Cell Type:   

v-Abl pro-B cell


Organism:   

Mus musculus


Treatment:   

STI-571


Treatment Time:   

96hrs


Treatment Dose:   

3μM


Genotype:   

Emu-Bcl2, Lig4-/- Ku70-/-


Cell Phase:   

G1


Targeted break:   

Jk1-CE


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr670721467707242217072252468421.4-
chr667610232676107416761049867455.3-
chr668736056687365856873630463359.7+
chr669814362698149146981464052204.1+
chr670116766701173317011705451364.7-
chr670073774700742807007401750891.4-
chr669681140696816846968140345833.8-
chr667913503679143146791404342840.3-
chr669700471697010156970075040198.5-
chr668050161680507036805043730920-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr670721494707242217072252471502.1-
chr670073774700742647007401766089.3-
chr667913717679142876791404362715.2-
chr670116802701173147011705459107.6-
chr667610234676107386761049853573.8-
chr668736057687365856873630450242.7+
chr669681140696816846968140347076.8-
chr669814362698148996981464046602.9+
chr669700493697010156970075041728.4-
chr670314652703151317031489939376.1+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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