DNA Damage Atlas

GSM4952338-Lig4Ku70_A1_1_RAG_Rep3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR13177208


Source Project ID:   

GSE162453

Cell Type:   

v-Abl pro-B cell


Organism:   

Mus musculus


Treatment:   

STI-571


Treatment Time:   

96hrs


Treatment Dose:   

3μM


Genotype:   

Emu-Bcl2, Lig4-/- Ku70-/-


Cell Phase:   

G1


Targeted break:   

Jk1-CE


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr667913717679143076791404367962.1-
chr670116802701173817011704552692.7-
chr667610225676107386761048851315.7-
chr669681108696816886968138948694.3-
chr670721443707254577072254945039.4-
chr670073560700743607007401740969.3-
chr669700493697010316970076437913.5-
chr670314652703152817031490734091.4+
chr670386426703869247038666733957.3-
chr668121532681221366812181332327.5-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr670721494707242217072254971502.1-
chr670073774700742647007401766089.3-
chr667913717679142876791404362715.2-
chr670116802701173147011704559107.6-
chr667610234676107386761048853573.8-
chr668736057687365856873630450242.7+
chr669681140696816846968138947076.8-
chr669814362698148996981463546602.9+
chr669700493697010156970076441728.4-
chr670314652703151317031490739376.1+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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