DNA Damage Atlas

GSM4952345-Ku70_B1_RAG_Rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR13177215


Source Project ID:   

GSE162453

Cell Type:   

v-Abl pro-B cell


Organism:   

Mus musculus


Treatment:   

STI-571


Treatment Time:   

96hrs


Treatment Dose:   

3μM


Genotype:   

Emu-Bcl2, Ku70-/-


Cell Phase:   

G1


Targeted break:   

Jk1-CE


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

LAM-HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr669814066698150556981463731331.3+
chr669764160697649366976453125085.3+
chr670572665705735317057322323640.3-
chr668736014687368106873630422511.4+
chr667609070676110326761049821458.5-
chr670073151700747517007403019394.8+
chr668121329681229376812181716271.9-
chr670116533701174267011705015844.4-
chr670314283703155107031489915705.7+
chr668990090689911406899076915506.6+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr667609841676110326761049836566.6-
chr669814204698150556981463736304.8+
chr669764160697649366976453125222.5+
chr670073406700747517007403023090.5+
chr670572665705735317057322322922.1-
chr670314556703154297031489921333.5+
chr668736014687368106873630420703+
chr668990246689911406899076918883.1+
chr669016085690169696901656818805.6+
chr668425578684265796842604716992.7-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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