DNA Damage Atlas

GSM4952346-Ku70_B1_RAG_Rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR13177216


Source Project ID:   

GSE162453

Cell Type:   

v-Abl pro-B cell


Organism:   

Mus musculus


Treatment:   

STI-571


Treatment Time:   

96hrs


Treatment Dose:   

3μM


Genotype:   

Emu-Bcl2, Ku70-/-


Cell Phase:   

G1


Targeted break:   

Jk1-CE


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

LAM-HTGTS


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr667609841676110966761049834290-
chr669814204698156376981463721799.5+
chr669764143697652626976453118045.4+
chr668990162689912076899076915416.5+
chr670572595705739147057322314682.3-
chr668425388684265796842606114340.2-
chr670314556703157667031490714243.2+
chr669015771690169696901656814040.8+
chr667913275679146846791404513625.2-
chr668861850688626346886228013397.1+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr667609841676110326761049836566.6-
chr669814204698150556981463736304.8+
chr669764160697649366976453125222.5+
chr670073406700747517007403023090.5+
chr670572665705735317057322322922.1-
chr670314556703154297031490721333.5+
chr668736014687368106873630420703+
chr668990246689911406899076918883.1+
chr669016085690169696901656818805.6+
chr668425578684265796842606116992.7-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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