DNA Damage Atlas

GSM4952348-Lig4_B1_RAG_Rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR13177218


Source Project ID:   

GSE162453

Cell Type:   

v-Abl pro-B cell


Organism:   

Mus musculus


Treatment:   

STI-571


Treatment Time:   

96hrs


Treatment Dose:   

3μM


Genotype:   

Emu-Bcl2, Lig4-/-


Cell Phase:   

G1


Targeted break:   

Jk1-CE


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

LAM-HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr4102619949102620155102620150203147-
chr7130591571130591786130591573141927+
chr14748459897484619774846191119459-
chr8126055883126056087126056085111117-
chr513698261713698282913698282596642.6-
chr410867898410867918910867918693563.3-
chr790441810904420329044202074616.9-
chrX14551503314551524214551503464658+
chr1012176306512176328712176327858908.1-
chr510407215310407237010407236758256.6-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr4102619950102620155102620150174830-
chr7130591571130591782130591573120842+
chr14748459907484619774846191115340-
chr513698261913698282913698282586243.4-
chr410867898510867918910867918685199.9-
chr1012176307512176328312176327871760.9-
chr790441820904420309044202067551.5-
chrX14551503314551523514551503462956.9+
chr510407216310407237010407236760889.6-
chr212910946612910967212910946959618.3+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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