DNA Damage Atlas

GSM4952350-Lig4_B1_RAG_Rep3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR13177220


Source Project ID:   

GSE162453

Cell Type:   

v-Abl pro-B cell


Organism:   

Mus musculus


Treatment:   

STI-571


Treatment Time:   

96hrs


Treatment Dose:   

3μM


Genotype:   

Emu-Bcl2, Lig4-/-


Cell Phase:   

G1


Targeted break:   

Jk1-CE


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

LAM-HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr4102619950102620155102620150160163-
chr14748459877484620974846194104077-
chr7130591570130591786130591573103214+
chr513698261113698283313698282587643.4-
chr410867898510867918910867918683454.5-
chr1012176307512176328312176327877952-
chr1445812658458128684581285869488.7-
chr1193763758937639639376376065251.6+
chrX14551503314551523714551503459610.4+
chr212910946612910967412910946958464+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr4102619950102620155102620150174830-
chr7130591571130591782130591573120842+
chr14748459907484619774846194115340-
chr513698261913698282913698282586243.4-
chr410867898510867918910867918685199.9-
chr1012176307512176328312176327871760.9-
chr790441820904420309044202067551.5-
chrX14551503314551523514551503462956.9+
chr510407216310407237010407236360889.6-
chr212910946612910967212910946959618.3+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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