DNA Damage Atlas

GSM4952354-Lig4Ku70_C1_RAG_Rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR13177224


Source Project ID:   

GSE162453

Cell Type:   

v-Abl pro-B cell


Organism:   

Mus musculus


Treatment:   

STI-571


Treatment Time:   

96hrs


Treatment Dose:   

3μM


Genotype:   

Emu-Bcl2, Lig4-/- Ku70-/-


Cell Phase:   

G1


Targeted break:   

Jk1-CE


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr668736023687366326873630493624.9+
chr670073425700743297007401783643.8-
chr670721836707241407072254864038.1-
chr668121360681220706812182363750.9-
chr667610025676109516761049662521.3-
chr669814372698149426981463755093.9+
chr669681181696816656968139542409.7-
chr668990524689909976899076134123.4+
chr669700345697010116970078132664.2+
chr670116730701173077011705032229.6-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr6700735907007427770074017118169-
chr6676101836761074667610496101419-
chr668121580681220706812182397394.1-
chr668736054687366326873630487981.2+
chr669814373698149146981463765897.4+
chr670722136707241397072254864743.2-
chr669700533697010026970078154836.6+
chr669764289697647586976453150675.7+
chr670386441703868857038666445864.8-
chr669681181696816566968139544708.1-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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