DNA Damage Atlas

GSM4952358-Lig4Ku70K_C1_RAG_Rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR13177228


Source Project ID:   

GSE162453

Cell Type:   

v-Abl pro-B cell


Organism:   

Mus musculus


Treatment:   

STI-571


Treatment Time:   

96hrs


Treatment Dose:   

3μM


Genotype:   

Emu-Bcl2, Lig4-/- Ku70-/- +Ku70


Cell Phase:   

G1


Targeted break:   

Jk1-CE


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr6700738017007426970074013415933-
chr6707223107072255570722526244067-
chr6681215946812182468121821160416-
chr6683029356830315168303151111912-
chr6696072866960748769607287107604+
chr6676102686761072367610484100663-
chr669016590690168036901660365703.8+
chr668736094687365186873629463013.1-
chr670573022705732257057322562673.1-
chr668017274680174846801748160584-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr6707223107072255570722526216368-
chr6700738017007424170074013211974-
chr6681215946812182468121821110862-
chr667610282676107236761048489465.5-
chr668736094687365186873629487780.5-
chr669814428698148366981462863456.4-
chr668164716681649186816491625307.2-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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