DNA Damage Atlas

GSM4952361-Lig4L_C_RAG_Rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR13177231


Source Project ID:   

GSE162453

Cell Type:   

v-Abl pro-B cell


Organism:   

Mus musculus


Treatment:   

STI-571


Treatment Time:   

96hrs


Treatment Dose:   

3μM


Genotype:   

Emu-Bcl2, Lig4-/- +Lig4


Cell Phase:   

G1


Targeted break:   

Jk1-CE


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr6681216056812183468121824164820-
chr6687362946873652668736303144922+
chr6706988527069907070699064106219-
chr669814428698148486981463495710+
chr668862262688624786886226894123.4+
chr668990758689909766899076393259.9+
chr669700568697009886970077280603.7+
chr670073811700743487007402780376.4+
chr668631960686321826863196662791.5+
chr669110903691111226911090959422.3+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr6681216056812183468121824184450-
chr6687362966873652668736303142164+
chr6700738207007425270074027102514+
chr6706988527069907070699064101370-
chr668862262688624786886226896078.4+
chr668990758689909766899076394166.6+
chr669814428698148486981463486815.8+
chr669416892694171116941689882041.4+
chr669700568697009876970077281827.9+
chr670216855702170747021686176369.7+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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