DNA Damage Atlas

GSM4952362-Lig4L_C_RAG_Rep3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR13177232


Source Project ID:   

GSE162453

Cell Type:   

v-Abl pro-B cell


Organism:   

Mus musculus


Treatment:   

STI-571


Treatment Time:   

96hrs


Treatment Dose:   

3μM


Genotype:   

Emu-Bcl2, Lig4-/- +Lig4


Cell Phase:   

G1


Targeted break:   

Jk1-CE


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr6687362966873652668736303149811+
chr6700738207007425270074027108636+
chr670698839706990707069906497630.6-
chr668121591681220306812182493995.8-
chr669814425698148486981463491527.3+
chr668862262688624826886226888509.6+
chr669416892694171116941689881446.4+
chr669700564697009876970077276152.9+
chr669544358695445876954436470748.5+
chr667610253676107116761050566181.4-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr6681216056812183468121824184450-
chr6687362966873652668736303142164+
chr6700738207007425270074027102514+
chr6706988527069907070699064101370-
chr668862262688624786886226896078.4+
chr668990758689909766899076394166.6+
chr669814428698148486981463486815.8+
chr669416892694171116941689882041.4+
chr669700568697009876970077281827.9+
chr670216855702170747021686176369.7+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab