DNA Damage Atlas

GSM4954666-ATM_KO_2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR13187342


Source Project ID:   

GSE162568

Cell Type:   

anti-CD40 and Il4 activated B cell


Organism:   

Mus musculus


Strain:   

129


Genotype:   

ATM-/-


Targeted break:   

5'Sμ region


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1211333733111334300611333753119430.9-
chr1211327393611327786311327516616793-
chr843502965435031754350297512870+
chr1211332809311333109411333080811527.7-
chrX13526141913526162113526141910703.8+
chr104256256742562789425627679739.47-
chr21136921741136923761136923768027.83-
chr38342951483429715834295145378.51+
chr121018042181018044201018042185351.89+
chr156727417367274375672743735351.89-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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