DNA Damage Atlas


GSM4979794-SHR_DMC1_SSDS_Prdm9KO




Basic Information

Manual

Sample ID:   

SRR13272003


Source Project ID:   

GSE163474

Cell Type:   

Testis


Organism:   

Rattus norvegicus


Strain:   

SHR/OlaIpcv


Genotype:   

Prdm9-/-


Harvested Time:   

age: Adult


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

ChIP-seq (anti-DMC1)


Others:   

control: GSM4979798-SHR_Input_SSDS_wildtype


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
X10412463104159671041421546.4192/
X10562024410562299510562161942.2759/
X74704267747076217470594439.1982/
X62366367623689106236763836.4545/
386269748629046862801035.3862/
X34793008347946143479381135.1588/
649825219498261524982568534.3247/
X37053794370551743705448433.5883/
X15986282159896871598798432.9184/
2032132513321346693213359132.444/
Download the Full Peak List



Motif Analysis

Manual





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