DNA Damage Atlas


GSM4979795-SHR_DMC1_SSDS_Prdm9KOHet




Basic Information

Manual

Sample ID:   

SRR13272004


Source Project ID:   

GSE163474

Cell Type:   

Testis


Organism:   

Rattus norvegicus


Strain:   

SHR/OlaIpcv


Genotype:   

Prdm9+/-


Harvested Time:   

age: Adult


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

ChIP-seq (anti-DMC1)


Others:   

control: GSM4979798-SHR_Input_SSDS_wildtype


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
X33258702332618663326028449.4667/
X11113289611113646911113468241.5643/
X15725057215725395915725226536.4953/
X69251126692534256925227536.3602/
X21011209210143892101279932.9983/
X20868812088666208777331.8844/
X15286688415286867915286778131.7068/
X69172107691745216917331431.681/
X15955809715956116115955962931.055/
X10375002010375298210375150130.6233/
Download the Full Peak List



Motif Analysis

Manual





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