DNA Damage Atlas


GSM4990621-RFe003_DPD190_HiFi_3




Basic Information

Manual

Sample ID:   

SRR13312157


Source Project ID:   

GSE163912

Cell Type:   

CD34+ HSPCs


Organism:   

Homo sapiens


Treatment:   

Resuspended in P3 buffer with complexed Cas9:HBB RNPs + electroporated using the Lonza 4D Nucleofector


Targeted break:   

HBB


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Others:   

high fidelity Cas9 genome-wide repair


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrX1226702451226704461226704461552.01-
chr37973529379735615797352931162.56+
chr9104595661104596100104595882994.842-
chr10122048255122048456122048255620.804+
chr19155928831559308415592883620.804+
chr2206544490206544691206544490620.804+
chr13261617952616199726161995617.731-
chr2409322304093243240932430617.731-
chr10551144315511463455114631614.688-
chr18198538831985408619854083614.688-
Download the Full Peak List



Motif Analysis

Manual





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