DNA Damage Atlas

GSM5035588-C13

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR13531053


Source Project ID:   

GSE165538

Cell Type:   

Sperm


Organism:   

Bos taurus


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2000


Technique:   

OG-seq


Others:   

condition: Fertile
control: GSM5035587-C13-1


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr2818935921895109189403085.8463/
chr385603547856041238560383479.1321/
chr430634776306352333063500368.3915/
chr511413484211413572711413508263.275/
chr2623354945233553792335516161.5136/
chr114540733414540775214540754260.7527/
chr1110728451710728692510728521860.5715/
chr2930245200302456163024540759.4795/
chr1433404804334060053340522853.6746/
chr430638555306390923063882248.5023/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr28189373018949811894030104.1/
chr114540745514540775214540754285.5037/
chr2623355065233553792335516185.022/
chr2930245200302454953024540783.8762/
chr385603548856041238560383479.2697/
chr157449302574495695744949073.1622/
chr451995446519957495199546571.9911/
chr2931044542310448523104475771.4158/
chr836127987361282723612806970.8262/
chr2930281309302819583028179668.2246/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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