DNA Damage Atlas

GSM5035590-C14

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR13531055


Source Project ID:   

GSE165538

Cell Type:   

Sperm


Organism:   

Bos taurus


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2000


Technique:   

OG-seq


Others:   

condition: Infertile
control: GSM5035589-C14-1


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr27435780984357845343578276102.148/
chr2623355065233553832335522390.4398/
chr2818937301894981189403881.5627/
chr1433404864334058863340522780.9964/
chr1110728457210728682510728540980.8088/
chr385603548856043868560382474.011/
chr2930281309302819583028148470.1319/
chr114408080114408112114408096069.5551/
chr114529381514529429214529413365.0118/
chr874783042747837677478328862.4352/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr3856035488560412385603824104.384/
chr2623355065233553792335522391.5919/
chr2818937301894981189403881.5627/
chr1433404864334058863340522780.9964/
chr1110728457210728682510728540980.8088/
chr114408080114408110814408096072.5004/
chr2930281309302819583028148470.1319/
chr451995446519957495199560469.3307/
chr2930305852303061433030597668.7521/
chr2728848511288488272884866768.457/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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