DNA Damage Atlas

GSM5061961-Neuro-2A_DACH1_10Q

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR13622081


Source Project ID:   

GSE166119

Cell Type:   

Neuro-2a cell


Organism:   

Mus musculus


Treatment:   

Transfected with plasmids encoding ataxin-7 10Q, spCas9 and sgRNA for site 1 from PX458


Layout:   

SINGLE


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1326615201266154492661542236849.5-
chr1872751611727518837275163023518.7+
chr41014837361014839471014839405413.91-
chr101289986491289988631289988535338.01-
chr49216420192164474921644603905.42-
chr11685923541685925841685923763311.12+
chr183328188533282115332819152317.78+
chr31591415951591418121591418122105.69-
chr51081811391081813651081813652021.83-
chr63153173731531939315317371885.04+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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