DNA Damage Atlas

GSM5072244-AA1_dmc1_SSDS_re-analysis

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR13670815


Source Project ID:   

GSE166483

Cell Type:   

Testis


Organism:   

Homo sapiens


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

ChIP-seq (anti-DMC1)


Others:   

control: GSM5072245-AA1_input_SSDS_re-analysis


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA12202156661393412.7898/
rDNA1354157214611.3637/
chr414961911498812149750111.2912/
chrX15329214015329960915329587410.3863/
chrX1521045101521104411521074759.65472/
chrX1530330171530396491530363339.51877/
chr111469763147380914717869.21879/
chr101343351171343382181343366679.11991/
chr166012586041546027068.58637/
chrX1536853371536934441536893908.38092/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrX15368914315368943815368939030.8675
chr319475643819475672619475653329.7936
chr913949328013949358713949349421.3901
chrX26089483260897382608965417.8547
chr1779525248795258317952543612.9158
chr112842522849712848788.28076
chr81444801831444802561444802484.79763
Download the Full Merged Peak List


Visualization

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Motif Analysis

Manual





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