DNA Damage Atlas

GSM5072246-AA2_dmc1_SSDS_re-analysis

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR13670817


Source Project ID:   

GSE166483

Cell Type:   

Testis


Organism:   

Homo sapiens


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

ChIP-seq (anti-DMC1)


Others:   

control: GSM5072247-AA2_input_SSDS_re-analysis


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrX1536876201536922941536899576.81958/
chrX1532934761532985561532960166.49259/
chr41495779149894314973616.37902/
chr101343349651343383161343366405.88839/
chr42303711230780823057595.8275/
chr41623270162665816249645.64245/
chr41787124179047817888015.13703/
chr11023944102734110256425.12031/
chr196507266543936525595.06772/
chr48411318443768427535.05674/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr913949328013949358713949349814.8324
chr177952524879525831795256379.92147
chr22410908372410911052410911009.18421
chr81444802991444804451444803448.14837
chrX2608948326089738260894848.04369
chr112842522849712845087.64542
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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