DNA Damage Atlas

GSM5072248-AA3_dmc1_SSDS

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR13670819


Source Project ID:   

GSE166483

Cell Type:   

Testis


Organism:   

Homo sapiens


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

ChIP-seq (anti-DMC1)


Others:   

control: GSM5072249-AA3_input_SSDS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA276132563008156.989/
rDNA10821115331117756.2767/
rDNA12518141071331241.0341/
rDNA53616116573840.5273/
rDNA42887965340.384/
rDNA14622169181538.4701/
rDNA67668009738736.5338/
rDNA14220146771444826.3035/
chr9_gl000199_random33916350843450024.1179/
chrUn_gl00022011792811855111823922.9979/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr212783089212783107512783104021.2321
chr1128425228497128461619.7584
chrX14495969014495989914495973613.3621
chr206257726362577434625774289.94092
chr22410908372410911052410910679.51435
chr82034408203458220344128.37387
chrX1499375511499378251499375973.54514
chr81444801831444802561444802143.32661
chr91394937291394937481394937470
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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