DNA Damage Atlas

GSM5072250-AA4_dmc1_SSDS

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR13670821


Source Project ID:   

GSE166483

Cell Type:   

Testis


Organism:   

Homo sapiens


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

ChIP-seq (anti-DMC1)


Others:   

control: GSM5072251-AA4_input_SSDS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr715297962615297972415297967548.6837/
rDNA76478023783521.206/
rDNA28113185299820.9699/
rDNA40286863518.3726/
rDNA14119146671439316.8757/
rDNA12928141061351716.6164/
rDNA14442135178915.0385/
chr1936800275368005663680042014.9353/
rDNA12491129011269614.745/
chrX35903721359038303590377513.7907/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr913949372913949374813949374720.6388
chr319475643819475672619475645313.8428
chr112842522849712846989.81706
chr189049009050749050419.39025
chr206257757962577787625776168.95505
chr82034408203458220345036.94878
chr22410908372410911052410909316.46245
chrX2608981326089983260898805.95894
chr21278308921278310751278309725.17849
chrX1449596901449598991449597945.1597
Download the Full Merged Peak List


Visualization

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Motif Analysis

Manual





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