DNA Damage Atlas

GSM5072254-AB1_dmc1_SSDS_re-analysis

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR13670825


Source Project ID:   

GSE166483

Cell Type:   

Testis


Organism:   

Homo sapiens


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

ChIP-seq (anti-DMC1)


Others:   

control: GSM5072255-AB1_input_SSDS_re-analysis


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random3355335367344606.62036/
chrX1532916581532992141532954366.39897/
chrX1536862541536930521536896536.31366/
chrX1530332071530395791530363936.30966/
chr41786876179095017889136.30572/
chrX1542833181542879401542856295.76144/
chr196507506547266527385.6732/
rDNA1216915768139685.57109/
chr56677346712766695055.51333/
chrX1521040711521076591521058655.35533/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr319475643819475672619475648217.0422
chrX26089483260897382608951512.2858
chr212783089212783107512783105510.8423
chr112842522849712848959.58597
chr22410908372410911052410910479.54667
chr177952524879525831795257159.49354
chr91394932801394935871394934288.84414
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab