DNA Damage Atlas

GSM5072256-AC_dmc1_SSDS_re-analysis

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR13670827


Source Project ID:   

GSE166483

Cell Type:   

Testis


Organism:   

Homo sapiens


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

ChIP-seq (anti-DMC1)


Others:   

control: GSM5072257-AC_input_SSDS_re-analysis


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1110767311081976107935321.7769/
chrX14993508014994260614993884319.56/
chrX15368596115369190815368893417.9238/
chr814563724914564298714564011815.8516/
chr710905021094842109267215.0263/
chr1213263485813263809313263647513.5572/
chrX15329349315329859415329604313.3827/
chr519141321918771191645113.359/
chrX15210430815210953515210692113.3154/
chrX15373039915373698115373369012.6601/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr913949328013949358713949348752.7953
chrX15368870715368906615368893448.8662
chrX26088896260892222608890941.237
chr1779525248795258317952551915.6996
chr1688554143885542378855421212.1713
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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