DNA Damage Atlas

GSM5072258-AN_dmc1_SSDS

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR13670829


Source Project ID:   

GSE166483

Cell Type:   

Testis


Organism:   

Homo sapiens


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

ChIP-seq (anti-DMC1)


Others:   

control: GSM5072259-AN_input_SSDS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr7152979620152979725152979672349.5/
chrUn_gl00021617821890183681.722/
chr119245459519245467719245463662.3143/
chrX35903677359038333590375559.5545/
chrX64603912646039986460395559.416/
chr1746954734695567469552054.3593/
chrX46928382469284854692843354.1194/
chr1785884028588489858844553.3937/
chrX14855200614855213714855207153.1899/
chr215344492715344503215344497953.0886/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr2062577579625777876257766279.2819
chrX13707410713707419613707415252.1938
chrX14993755114993782514993759033.0592
chrX84394328843944288439438027.8715
chr1890490090507490497426.6968
chr820344082034582203451425.362
chr1410339692710339709910339702924.3065
chrX15368870715368906615368883722.644
chr814564014714564025314564020021.9115
chr212783089212783107512783092721.5763
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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