DNA Damage Atlas

GSM5072260-CL4_dmc1_SSDS_re-analysis

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR13670831


Source Project ID:   

GSE166483

Cell Type:   

Testis


Organism:   

Homo sapiens


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

ChIP-seq (anti-DMC1)


Others:   

control: GSM5072261-CL4_input_SSDS_re-analysis


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr7152979626152979720152979673192.724/
chrUn_gl00021649635139505154.8519/
chrUn_gl00021611572017158750.8612/
chrX13965363813965383013965373439.7281/
chr378504687850617785054237.595/
chr119245459519245467119245463334.5007/
chr1669946819699469456994688234.0527/
chrX13707410313707419613707414933.3203/
chr1746954784695558469551832.7757/
chrX28479404284794932847944832.1396/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrX13707410713707419613707414934.8179
chr1128425228497128461224.6988
chrX14993755114993782514993775723.0539
chrX84394328843944288439433319.0695
chrX26088896260892222608911219.011
chr913949328013949358713949348118.6347
chr913949374913949407613949401916.037
chrX26089813260899832608990111.9184
chrX26089483260897382608961111.2173
chr21278308921278310751278309839.7692
Download the Full Merged Peak List


Visualization

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Motif Analysis

Manual





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