DNA Damage Atlas

GSM5076715-gamma_ChIPSeq_Induced

Basic Information Genome Browser Quantification


Basic Information

Manual

Sample ID:   

SRR13690480


Source Project ID:   

GSE166631

Cell Type:   

DiVA


Organism:   

Homo sapiens


Treatment:   

4-Hydroxytamoxifen


Treatment Time:   

4hrs


Treatment Dose:   

300nM


Targeted break:   

AsiSI


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

ChIP-seq (anti-γH2AX)


Others:   

control: GSM5076717-Input_gamma_ChIPSeq_Induced


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr11118965051118965054179.65//
chr145316326453163267179.65//
chr176224174962241752179.65//
chr194249785742497860179.65//
chr172094630220946305167.673//
chr24335834043358343167.673//
chr13105238553105238556143.72//
chr178023111280231115143.72//
chr2208030729208030732143.72//
chr39953696699536969143.72//




Copyright © 2023 All Rights Reserved by Wu lab