DNA Damage Atlas

GSM5086321-Sample_1_U2OS50_KBr_0h_hoGG1_damage

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR13576545


Source Project ID:   

GSE166843

Cell Type:   

U2OS


Organism:   

Homo sapiens


Treatment:   

KBrO3


Treatment Dose:   

50mM


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

RADD-Seq


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM9708110271066925.3894/
chrM19653960235724.2555/
chrM0106458720.1544/
chrM16651921176215.8335/
chr9_gl000199_random34410345113445913.7597/
chr9_gl000199_random57111573435716012.3964/
chr9_gl000199_random68637687276868112.01/
chrUn_gl00022550800509815090111.4105/
chr9_gl000199_random98922989979895811.3237/
chr9_gl000199_random1556561557241556899.93476/
Download the Full Peak List


Visualization

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Motif Analysis

Manual





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