DNA Damage Atlas

GSM5086322-Sample_3_U2OS50_KBr_1h_hoGG1_damage

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR13576544


Source Project ID:   

GSE166843

Cell Type:   

U2OS


Organism:   

Homo sapiens


Treatment:   

KBrO3


Treatment Dose:   

50mM


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

RADD-Seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM07407342912.4718/
chr9_gl000199_random5682757486571614.30133/
chrUn_gl00022604231884.19423/
chr19_gl000208_random29782003.86541/
chrUn_gl0002251165861171221169232.96758/
chr41679442181679454221679448752.8963/
rDNA1354514491138942.56525/
chrUn_gl0002201297941302581300002.54908/
chrUn_gl0002201427291433291430062.37914/
chr9_gl000199_random6831268875686792.2095/
Download the Full Peak List


Visualization

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Motif Analysis

Manual





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