DNA Damage Atlas

GSM5086323-Sample_5_U2OS50_KBr_0h_hoGG1_repair

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR13576543


Source Project ID:   

GSE166843

Cell Type:   

U2OS


Organism:   

Homo sapiens


Treatment:   

KBrO3 + hOGG1 repair


Treatment Dose:   

50mM


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

RADD-Seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM06021346614.3571/
chr9_gl000199_random5696257486571605.12155/
chr41679442131679454881679448313.55195/
rDNA1334314443138933.46898/
chr19_gl000208_random06762043.19458/
chrUn_gl0002201427311431991430072.86719/
rDNA2820528771285352.85231/
chrUn_gl0002201297941302501299962.80471/
chrUn_gl00022606451892.7305/
chrUn_gl0002161478215382151832.34124/
Download the Full Peak List


Visualization

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Motif Analysis

Manual





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